CommOligo | Tool name | CommOligo |
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| URL | http://ieg.ou.edu/software.htm |
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| Important features | 1. Selects optimal oligonucleotides for microarray construction.
2. Flexible for the user to choose values for different parameters, such as sequence identity, the length of maximum continuous stretches, and free energy. The length of oligonucleotide can be from 8 to 128mer. |
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| Citations | Li X, He Z, Zhou J. Selection of optimal oligonucleotide probes for
microarrays using multiple criteria, global alignment and parameter estimation.
Nucleic Acids Res. 2005 Oct 24;33(19):6114-23. Print 2005. PubMed PMID: 16246912. |
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| Year of publication | 2005 |
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| Rank by usage frequency | 100 |
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| Comments | Features are written as claimed by the author. Not validated completely. |
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| Function | Microarray probes |
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| Category | Downloadable, Free |
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| Features | 1. Picks up single or multiple oligonucleotide probes for each sequence/gene.
2. Uses global alignment algorithms and considers multiple criteria for probe design. |
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| Description | For microarray studies. |
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